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Patient Survival Data:
This text file contains clinical data from the 92 patients used to in the study.

Fig 1A and Fig 1C data file:
These 2 files contains data for Fig 1A and Fig 1C in the paper.

  • UNIQID is a unique ID for Lymphochip microarray feature.
  • NAME is a multi-field description of the Lymphochip microarray feature, with each field separated by a vertical bar. Fields may be empty depending on the information that is available concerning the sequence identity of the microarray feature. The first field is the Genbank Accession number for a named gene that the microarray feature represents. The second field is the Genbank Accession number for an IMAGE consortium cDNA clone. For some Lymphochip features, this Genbank accession is derived from the IMAGE cDNA clone that is used to generate the microarray feature and that has been sequence verified (designated by *). For other features, a representative Genbank accession was chosen that matches the sequence of the cDNA clone used to generate the microarray feature, but is not actually the accession associated with that clone (designated by ~). The third field is the Unigene cluster ID for the gene or cDNA clone represented by the microarray feature. The fourth field is the Unigene cluster title. Lymphochip microarray clones that have not been sequence verified are designated by their Lymphochip unique ID in this field.
  • Array columns contain measurement of the log2 CY5/CY3 expression ratio for each feature. The CY5 channel represents the experimental sample mRNA. The CY3 channel represents the control reference mRNA pool used in every Lymphocip microarray experiment.


Ratio Data file:
This text file contains primary ratio data for all 92 samples in the study.
  • UNIQID is a unique ID for Lymphochip microarray feature.
  • NAME is a multi-field description of the Lymphochip microarray feature, with each field separated by a vertical bar. See Fig 1A/1C data file description above for details.
  • Array columns contain measurements of the log2 CY5/CY3 expression ratio for each feature. The CY5 channel represents the experimental sample mRNA. The CY3 channel represents the control reference mRNA pool used in every Lymphochip microarray experiment.


Proliferation signature expression file:
The text file contains data for a list of Lymphochip microarray features which were considered to be gene expression signatures of proliferation activity. A Proliferation Signature Average is calculated for each sample and stored in the Proliferation signature average file.
  • UNIQID is a unique ID for a Lymphochip microarray feature.
  • NAME is a multi-field description of the Lymphochip microarray feature, with each field separated by a vertical bar. See the Fig 1A/1C data file description above for details.
  • Array columns contain measurements of the log2 CY5/CY3 expression ratio for each feature. The CY5 channel represents the expreimental sample mRNA. The CY3 channel represents the control reference mRNA pool used in every Lymphochip microarray experiment.


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